Index

A

all_observables_defined() (FisherModel class method)

arbitrary_types_allowed (Config attribute) (PenaltyConfig attribute)

C

calculate_fisher_criterion() (in module eDPM.solving.solve_fsm)

check_if_identifiable() (in module eDPM.analysis.checks) Config (class in eDPM.model.fisher_model)

D

discrete_penalty_calculator_default() (in module eDPM.optimization.penalty) discrete_penalty_individual_template() (in module eDPM.optimization.penalty) display_entries() (in module eDPM.solving.display) display_fsmp_details() (in module eDPM.solving.display)

display_fsr_details() (in module eDPM.solving.display) display_heading() (in module eDPM.solving.display) display_optimization_end() (in module eDPM.optimization.display) display_optimization_start() (in module eDPM.optimization.display)

E

eDPM.analysis.checks module eDPM.database.json module eDPM.model.fisher_model module eDPM.optimization.caller module eDPM.optimization.display module eDPM.optimization.penalty module

eDPM.optimization.scipy_global_optim module eDPM.plotting.plotting module eDPM.solving.criteria module eDPM.solving.display module eDPM.solving.solve_fsm module

F

find_optimal() (in module eDPM.optimization.caller) fisher_determinant() (in module eDPM.solving.criteria) fisher_mineigenval() (in module eDPM.solving.criteria) fisher_ratioeigenval() (in module eDPM.solving.criteria) fisher_sumeigenval() (in module eDPM.solving.criteria)

FisherModel (class in eDPM.model.fisher_model) FisherModelParametrized (class in eDPM.model.fisher_model) FisherResults (class in eDPM.model.fisher_model) FisherResultSingle (class in eDPM.model.fisher_model) FisherVariables (class in eDPM.model.fisher_model)

G

generate_matrix_cols() (in module eDPM.solving.display)

get_S_matrix() (in module eDPM.solving.solve_fsm)

I

init_from() (FisherModelParametrized method)

J

json_dump() (in module eDPM.database.json)

json_dumps() (in module eDPM.database.json)

L

list_to_list_of_vectors() (in module eDPM.model.fisher_model)

list_to_nparray_of_float() (in module eDPM.model.fisher_model)

M

module eDPM.analysis.checks eDPM.database.json eDPM.model.fisher_model eDPM.optimization.caller eDPM.optimization.display eDPM.optimization.penalty eDPM.optimization.scipy_global_optim eDPM.plotting.plotting eDPM.solving.criteria eDPM.solving.display eDPM.solving.solve_fsm

N

nparray_correct_shape_and_float() (in module eDPM.model.fisher_model)

nparray_to_list_of_vectors() (in module eDPM.model.fisher_model)

O

ode_rhs() (in module eDPM.solving.solve_fsm)

P

penalty (PenaltyInformation attribute) penalty_inputs (PenaltyInformation attribute) penalty_ode_t0 (PenaltyInformation attribute) penalty_structure_cos() (in module eDPM.optimization.penalty) penalty_structure_gauss() (in module eDPM.optimization.penalty) penalty_structure_zigzag() (in module eDPM.optimization.penalty) penalty_summary (PenaltyInformation attribute)

penalty_times (PenaltyInformation attribute) PenaltyConfig (class in eDPM.optimization.penalty) PenaltyInformation (class in eDPM.optimization.penalty) plot_all_observables() (in module eDPM.plotting.plotting) plot_all_odes() (in module eDPM.plotting.plotting) plot_all_sensitivities() (in module eDPM.plotting.plotting) plot_all_solutions() (in module eDPM.plotting.plotting)

S

smart_union (Config attribute)

T

times_nparray_to_correct_shape() (in module eDPM.model.fisher_model)

V

validate_assignment (Config attribute) validate_covariance() (FisherModel class method) validate_inputs() (FisherModel class method)

validate_ode_t0() (FisherModel class method) validate_ode_x0() (FisherModel class method) validate_times() (FisherModel class method)